Tags: Gene Regulation

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  1. Regulation of Phaeodactylum plastid gene transcription

    2021-05-19 19:32:11 | Datasets | Contributor(s): Gilbert Kayanja, Iskander Ibrahim, Sujith Puthiyaveetil | doi:10.4231/ME5R-C919

    This dataset contains raw data used for plotting the figures associated with the following publication https://link.springer.com/article/10.1007/s11120-020-00811-1

    https://purr.purdue.edu/publications/3756

  2. The positions of ZFBS and ZFBS-Morph overlaps in the build canFam2 of the dog genome

    2020-09-18 15:11:52 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Xiaohui Carol Song | doi:10.4231/8VWJ-JP51

    Locating regulatory DNA elements in the dog genome.

    https://purr.purdue.edu/publications/3519

  3. Density of ZFBS-Morph overlaps in the build canFam2 of the dog genome

    2020-06-12 18:00:14 | Datasets | Contributor(s): Minou Bina, Phillip Wyss, Xiaohui Song | doi:10.4231/P6C1-5419

    This publication provides a file (in wig.gz format) for examining the density of ZFBS-Morph overlaps at the UCSC genome browser.

    https://purr.purdue.edu/publications/3520

  4. An overview of peak positions –in plots of ZFBS-morph-overlap density– with respect to known ICRs/gDMRs in the mouse genome

    2020-06-04 20:03:28 | Datasets | Contributor(s): Minou Bina | doi:10.4231/32C9-G644

    Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

    https://purr.purdue.edu/publications/3493

  5. Positions of known ICRs/gDMRs with respect to peaks in plots of ZFBS-morph-overlap density in the mouse genome

    2020-06-04 16:15:18 | Datasets | Contributor(s): Minou Bina | doi:10.4231/V87T-4X79

    Supplementary material for the publication entitled “Simultaneous discovery of candidate imprinted genes and Imprinting Control Regions in the mouse genome” Bina M., and Wyss P. bioRxiv doi: https://doi.org/10.1101/780551 (2019).

    https://purr.purdue.edu/publications/3504

  6. Density of ZFBS-Morph overlaps in the build bosTau8 of the Bos taurus genome

    2020-01-02 16:19:26 | Datasets | Contributor(s): Minou Bina, Phillip Wyss, Xiaohui Song | doi:10.4231/HWBM-2M96

    This publication provides a file (in wig.gz format) for displaying the density of ZFBS-Morph overlaps in the build bosTau8 of the cow genome.

    https://purr.purdue.edu/publications/3360

  7. The positions of ZFBS and ZFBS-Morph overlaps in the build bosTau8 of the Bos taurus genome

    2019-12-20 18:59:13 | Datasets | Contributor(s): Minou Bina, Phillip Wyss, Xiaohui Song | doi:10.4231/K1SE-T951

    This project provides data for locating the positions of the ZFBS and ZFBS-morph overlaps in the build bosTau8 of the cow genome.

    https://purr.purdue.edu/publications/3359

  8. Density of ZFBS-Morph overlaps in the build hg19 of the human genome

    2019-05-29 14:11:24 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Xiaohui Carol Song | doi:10.4231/PR3C-J556

    Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

    https://purr.purdue.edu/publications/2967

  9. The positions of ZFBS and ZFBS-Morph overlaps in the build hg19 of the human genome

    2019-05-28 20:13:53 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Xiaohui Carol Song | doi:10.4231/SK8Y-EA21

    Supplementary material for the publication entitled “Discovering candidate imprinted genes and Imprinting Control Regions in the human genome” Bina M. bioRxiv (2019), doi: 10.1101/678151.

    https://purr.purdue.edu/publications/3208

  10. Density of ZFBS-Morph overlaps in the build mm9 of the mouse genome

    2018-04-24 23:40:11 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Xiaohui Carol Song | doi:10.4231/R7W37TJH

    Supplementary material for the publication entitled “Imprinted Control Regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 Morphemes” Bina M.  Genomics, 109: 265–273 (2017).

    https://purr.purdue.edu/publications/2961

  11. Positions of predicted CTCF binding sites and unique A and B-repeats in the build hg19 of the Human Genome

    2018-01-25 22:46:40 | Datasets | Contributor(s): Minou Bina | doi:10.4231/R74B2ZHD

    Supplementary materials for a publication entitled “Assessment of the CTCF Binding Sites and Repeat-Positions Upstream the Human H19 Gene“ Bina, M. January 2018, bioRxiv doi: 10.1101/250407

    https://purr.purdue.edu/publications/2900

  12. Positions of ZFBS and ZFBS-Morph overlaps in the build mm9 of the mouse genome

    2017-04-24 15:42:44 | Datasets | Contributor(s): Minou Bina, Phillip Wyss, Xiaohui Song | doi:10.4231/R7C82782

    Supplementary materials for the publication entitled “Imprinted Control Regions Include Composite DNA Elements consisting of the ZFP57 Binding Site overlapping MLL1 Morphemes” Bina M. Genomics, in press

    https://purr.purdue.edu/publications/2473

  13. Potential Transcription Factor Binding Sites in the Human Genome (hg19)

    2014-10-08 20:03:39 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss | doi:10.4231/R7JM27JN

    Supplementary material for the article entitled “Discovering sequences with potential regulatory characteristics”. Bina M., Wyss P., et al. Genomics 93:314-22 (2009).

    https://purr.purdue.edu/publications/1719

  14. Localization of potential regulatory signals in the human genome

    2014-08-13 16:02:43 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss | doi:10.4231/R7V40S43

    Discovering sequences with potential regulatory characteristics

    https://purr.purdue.edu/publications/1697

  15. Localization of MLL1 morphemes in mouse mm9 genomic DNA

    2014-03-31 14:35:21 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Daidong Wang, Xiaohui C. Song | doi:10.4231/R7KW5CXF

    Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013)

    https://purr.purdue.edu/publications/1648

  16. Position of MLL1 morphemes in human genomic DNA

    2014-03-04 13:44:27 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Daidong Wang, Noorfatin J. Zulkefl, Elise Novorolsky | doi:10.4231/R7H41PBT

    Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

    https://purr.purdue.edu/publications/1639

  17. Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

    2013-12-17 08:58:43 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Syed A. Shah, Sheryl A. Lazarus, Wenhui Ren, Wojciech Szpankowski, Gregory E. Crawford, Sang P. Park, Xiaohui C. Song | doi:10.4231/D3DZ03214

    Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

    https://purr.purdue.edu/publications/1418

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