Tags: Bioinformatics

Datasets (1-14 of 14)

  1. Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

    2013-03-08 14:00:42 | Datasets | Contributor(s): Bin Li, Srinivasan Turuvekere, Manish Agrawal, Daisuke Kihara | doi:10.4231/D3BZ61792

    Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

    https://purr.purdue.edu/publications/1081

  2. Comparative genomics of small RNAs in bacterial genomes

    2013-03-08 14:01:22 | Datasets | Contributor(s): Stan Luban, Daisuke Kihara | doi:10.4231/D37659F6Q

    Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

    https://purr.purdue.edu/publications/1080

  3. Evaluation of Function Predictions for Moonlighting Proteins

    2013-02-14 16:32:14 | Datasets | Contributor(s): Ishita K. Khan, Meghana Chitale, Catherine Rayon, Daisuke Kihara | doi:10.4231/D3T727G0X

    Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

    https://purr.purdue.edu/publications/1066

  4. Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

    2013-02-14 16:21:27 | Datasets | Contributor(s): Troy Hawkins, Meghana Chitale, Daisuke Kihara | doi:10.4231/D3Z02Z836

    Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

    https://purr.purdue.edu/publications/1072

  5. Limitations and Potentials of Current Motif Discovery Algorithms

    2013-03-08 14:00:02 | Datasets | Contributor(s): Jianjun Hu, Bin Li, Daisuke Kihara | doi:10.4231/D33F4KN2K

    Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

    https://purr.purdue.edu/publications/1082

  6. Localization of potential regulatory signals in the human genome

    2014-08-13 16:02:43 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss | doi:10.4231/R7V40S43

    Discovering sequences with potential regulatory characteristics

    https://purr.purdue.edu/publications/1697

  7. Occurrences of MLL1 morphemes in human cDNAs retrieved from GenBank

    2015-04-23 22:01:49 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss | doi:10.4231/R71834DW

    Supplementary material for the publication entitled “Impact of the MLL1 Morphemes on Codon Utilization and Preservation in CpG Islands.” Bina, M, Wyss P. Biopolymers in press.

    https://purr.purdue.edu/publications/1869

  8. Position of MLL1 morphemes in human genomic DNA

    2014-03-04 13:44:27 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Daidong Wang, Noorfatin J. Zulkefl, Elise Novorolsky | doi:10.4231/R7H41PBT

    Supplementary materials for the publication entitled “Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.” Bina M, Wyss P, et al. BMC Genomics. 14:927 (2013).

    https://purr.purdue.edu/publications/1639

  9. Predicted regulatory signals in the human HOXA locus: supplemental material for the report: Discovering sequences with potential regulatory characteristics

    2013-12-17 08:58:43 | Datasets | Contributor(s): Minou Bina, Phillip J. Wyss, Syed A. Shah, Sheryl A. Lazarus, Wenhui Ren, Wojciech Szpankowski, Gregory E. Crawford, Sang P. Park, Xiaohui C. Song | doi:10.4231/D3DZ03214

    Supplementary materials for the paper: Discovering sequences with potential regulatory characteristics. Bina M, Wyss P, Lazarus SA, Shah SR, Ren W, Szpankowski W, Crawford GE, Park SP, Song XC. Genomics. 2009 Apr;93(4):314-22

    https://purr.purdue.edu/publications/1418

  10. Separating Fractal and Oscillatory Components in the Power Spectrum of Neurophysiological Signal

    2015-09-29 00:35:06 | Datasets | Contributor(s): Haiguang Wen, Zhongming Liu | doi:10.4231/R7WQ01R7

    Matlab toolbox for separating the fractal (scale-free) component and oscillatory component in the power spectrum from the mixed time series

    https://purr.purdue.edu/publications/1987

  11. Signal Processing Toolbox for Simultaneously Acquired fMRI and EEG

    2016-06-07 13:01:13 | Datasets | Contributor(s): Rodrigo Castellanos, Zhongming Liu | doi:10.4231/R7QF8QT4

    This Matlab toolbox includes signal processing functions to remove gradient and pulse artifacts in EEG data recorded simultaneously with fMRI. It is distributed as a GUI plugin for EEGLAB.

    https://purr.purdue.edu/publications/1936

  12. Signal Processing Toolbox for Simultaneously Acquired fMRI and EEG

    2015-07-16 18:53:32 | Datasets | Contributor(s): Rodrigo Castellanos, Zhongming Liu | doi:10.4231/R7QF8QT4

    This Matlab toolbox includes signal processing functions to remove gradient and pulse artifacts in EEG data recorded simultaneously with fMRI. It is distributed as a GUI plugin for EEGLAB.

    https://purr.purdue.edu/publications/1936

  13. Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

    2013-03-08 16:08:05 | Datasets | Contributor(s): Y.H. Tan, H. Huang, Daisuke Kihara | doi:10.4231/D3DR2P83H

    Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

    https://purr.purdue.edu/publications/1107

  14. Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

    2013-02-14 16:31:37 | Datasets | Contributor(s): David Yifeng, Daisuke Kihara | doi:10.4231/D3PK0719W

    Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

    https://purr.purdue.edu/publications/1073

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