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  1. Workspace

    2013-04-24 08:35:37 | Datasets | Contributor(s): Michael Witt | doi:10.4231/D3DB7VQ16

    Workspace

    https://purr.purdue.edu/publications/workspace

  2. Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences

    2013-03-08 16:08:15 | Datasets | Contributor(s): Y.H. Tan, H. Huang, Daisuke Kihara | doi:10.4231/D3DR2P83H

    Supplementary materials for the paper: Statistical Potential based Amino Acid Similarity Matrices for Aligning Distantly Related Protein Sequences. Proteins: Structure, Function and Bioinformatics 64: 587-600. (2006)

    https://purr.purdue.edu/publications/1107

  3. Comparative genomics of small RNAs in bacterial genomes

    2013-03-08 14:01:31 | Datasets | Contributor(s): Stan Luban, Daisuke Kihara | doi:10.4231/D37659F6Q

    Supplemental Material for the paper: Comparative genomics of small RNAs in bacterial genomes. OMICS. 2007 Spring;11(1):58-73.

    https://purr.purdue.edu/publications/1080

  4. Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

    2013-03-08 14:00:52 | Datasets | Contributor(s): Bin Li, Srinivasan Turuvekere, Manish Agrawal, Daisuke Kihara | doi:10.4231/D3BZ61792

    Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

    https://purr.purdue.edu/publications/1081

  5. Limitations and Potentials of Current Motif Discovery Algorithms

    2013-03-08 14:00:12 | Datasets | Contributor(s): Jianjun Hu, Bin Li, Daisuke Kihara | doi:10.4231/D33F4KN2K

    Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

    https://purr.purdue.edu/publications/1082

  6. InfoSEAD protocol and sample memo

    2013-03-07 08:31:11 | Datasets | Contributor(s): Ruth Wertz, Michael Fosmire, Senay Purzer, Monica E. Cardella | doi:10.4231/D3WW7702P

    Includes a description of the InfoSEAD protocol and an example of how a document can be analyzed using the protocol.

    https://purr.purdue.edu/publications/1101

  7. Evaluation of Function Predictions for Moonlighting Proteins

    2013-02-14 16:32:23 | Datasets | Contributor(s): Ishita K. Khan, Meghana Chitale, Catherine Rayon, Daisuke Kihara | doi:10.4231/D3T727G0X

    Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

    https://purr.purdue.edu/publications/1066

  8. Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

    2013-02-14 16:31:47 | Datasets | Contributor(s): David Yifeng, Daisuke Kihara | doi:10.4231/D3PK0719W

    Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

    https://purr.purdue.edu/publications/1073

  9. Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

    2013-02-14 16:21:36 | Datasets | Contributor(s): Troy Hawkins, Meghana Chitale, Daisuke Kihara | doi:10.4231/D3Z02Z836

    Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

    https://purr.purdue.edu/publications/1072

  10. Controlling the cost and increasing the utility of network measurement infrastructures

    2012-09-13 12:57:19 | Datasets | Contributor(s): Ethan L Blanton | doi:10.4231/D3TH8BM5D

    Dissertation on the cost and utility of network measurement infrastructures, including mechanisms for admission control, identifying measurement patterns that will benefit from inference, and selecting vantage points for wide-scale measurement.

    https://purr.purdue.edu/publications/1029

  11. Phosphorus and Potassium Influence on Alfalfa Nutrition

    2012-02-22 13:24:07 | Datasets | Contributor(s): Jeffrey J. Volenec | doi:10.4231/D3251FJ7S

    Data from several studies on the influence of phosphorus and potassium nutrition on alfalfa. It includes numeric data such as yield, plant mass, plant counts, and tissue concentration of various nutrients

    https://purr.purdue.edu/publications/1004

  12. Graph of Flickr Photo-Sharing Social Network Crawled in May 2006

    2012-02-22 12:13:43 | Datasets | Contributor(s): David F Gleich | doi:10.4231/D39P2W550

    Crawl of the Flickr photo-sharing social network from May 2006 returning a graph with 820,878 nodes and 9,837,214 edges. Dataset is distributed as a SMAT file with README file with code to read file in Python and MATLAB.

    https://purr.purdue.edu/publications/1002

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