Datasets: Datasets

  1. Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria

    2013-03-08 14:00:52 | Contributor(s): Bin Li, Srinivasan Turuvekere, Manish Agrawal, Daisuke Kihara | doi:10.4231/D3BZ61792

    Supplementary material for the paper: Characterization of Local Geometry of Protein Surfaces with the Visibility Criteria. Proteins. 2008 May 1;71(2):670-83.

  2. Limitations and Potentials of Current Motif Discovery Algorithms

    2013-03-08 14:00:12 | Contributor(s): Jianjun Hu, Bin Li, Daisuke Kihara | doi:10.4231/D33F4KN2K

    Supplementary material for the papers: Limitations and Potentials of Current Motif Discovery Algorithms, Nucleic Acids Res. 2005; 33(15): 4899–4913

  3. InfoSEAD protocol and sample memo

    2013-03-07 08:31:11 | Contributor(s): Ruth Wertz, Michael Fosmire, Senay Purzer, Monica E. Cardella | doi:10.4231/D3WW7702P

    Includes a description of the InfoSEAD protocol and an example of how a document can be analyzed using the protocol.

  4. Evaluation of Function Predictions for Moonlighting Proteins

    2013-02-14 16:32:23 | Contributor(s): Ishita K. Khan, Meghana Chitale, Catherine Rayon, Daisuke Kihara | doi:10.4231/D3T727G0X

    Supplemental datasets used for evaluation of function predictions for moonlighting proteins.

  5. Threading Without Optimizing Weighting Factor for the Scoring Function Proteins

    2013-02-14 16:31:47 | Contributor(s): David Yifeng, Daisuke Kihara | doi:10.4231/D3PK0719W

    Supplementary Material for the Paper: Threading Without Optimizing Weighting Factor for the Scoring Function Proteins, in revision (2008). Proteins. 2008 Nov 15;73(3):581-96. doi: 10.1002/prot.22082.

  6. Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

    2013-02-14 16:21:36 | Contributor(s): Troy Hawkins, Meghana Chitale, Daisuke Kihara | doi:10.4231/D3Z02Z836

    Supplementary Material for the Paper: Functional similarity network with high confidence protein function prediction by PFP. BMC Bioinformatics. 2010 May 19;11:265. doi: 10.1186/1471-2105-11-265.

  7. Controlling the cost and increasing the utility of network measurement infrastructures

    2012-09-13 12:57:19 | Contributor(s): Ethan L Blanton | doi:10.4231/D3TH8BM5D

    Dissertation on the cost and utility of network measurement infrastructures, including mechanisms for admission control, identifying measurement patterns that will benefit from inference, and selecting vantage points for wide-scale measurement.

  8. Graph of Flickr Photo-Sharing Social Network Crawled in May 2006

    2012-02-22 12:13:43 | Contributor(s): David F Gleich | doi:10.4231/D39P2W550

    Crawl of the Flickr photo-sharing social network from May 2006 returning a graph with 820,878 nodes and 9,837,214 edges. Dataset is distributed as a SMAT file with README file with code to read file in Python and MATLAB.

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